How to run fmriprep (and not die trying)
Published:
If you are here you probably already know about fmriprep and BIDS, so no need to get into that. Let’s get started.
Posts by Tags
Docker
HPC
Tips for Singularity
Published:
Tips gathered after too-many trial-and-error attempts.
How to run fmriprep on an HPC cluster (Singularity)
Published:
This is a very short tutorial on how to run fMRIPrep on a shared cluster where you do not have access to Docker. This usually happens because Docker requires sudo access to run, so on shared machines administrators usually would rather install Singularity, which also uses containers but without sudo.
LMM
A heuristic for LMM model selection
Published:
Hopefully, this will help as a guide for your thinking through the process.
R
A heuristic for LMM model selection
Published:
Hopefully, this will help as a guide for your thinking through the process.
Singularity
Tips for Singularity
Published:
Tips gathered after too-many trial-and-error attempts.
How to run fmriprep on an HPC cluster (Singularity)
Published:
This is a very short tutorial on how to run fMRIPrep on a shared cluster where you do not have access to Docker. This usually happens because Docker requires sudo access to run, so on shared machines administrators usually would rather install Singularity, which also uses containers but without sudo.
Statistics
A heuristic for LMM model selection
Published:
Hopefully, this will help as a guide for your thinking through the process.
Estimating sample size
Published:
We have all been there: you want to fill in your pre-data-collection registration for your new study and you need to input a number for the targeted sample size.
fMRI
How to run fmriprep on an HPC cluster (Singularity)
Published:
This is a very short tutorial on how to run fMRIPrep on a shared cluster where you do not have access to Docker. This usually happens because Docker requires sudo access to run, so on shared machines administrators usually would rather install Singularity, which also uses containers but without sudo.
How to run fmriprep (and not die trying)
Published:
If you are here you probably already know about fmriprep and BIDS, so no need to get into that. Let’s get started.
fMRIPrep
How to run fmriprep on an HPC cluster (Singularity)
Published:
This is a very short tutorial on how to run fMRIPrep on a shared cluster where you do not have access to Docker. This usually happens because Docker requires sudo access to run, so on shared machines administrators usually would rather install Singularity, which also uses containers but without sudo.
How to run fmriprep (and not die trying)
Published:
If you are here you probably already know about fmriprep and BIDS, so no need to get into that. Let’s get started.
power analysis
Estimating sample size
Published:
We have all been there: you want to fill in your pre-data-collection registration for your new study and you need to input a number for the targeted sample size.
tutorial
A heuristic for LMM model selection
Published:
Hopefully, this will help as a guide for your thinking through the process.
Estimating sample size
Published:
We have all been there: you want to fill in your pre-data-collection registration for your new study and you need to input a number for the targeted sample size.
Tips for Singularity
Published:
Tips gathered after too-many trial-and-error attempts.
How to run fmriprep on an HPC cluster (Singularity)
Published:
This is a very short tutorial on how to run fMRIPrep on a shared cluster where you do not have access to Docker. This usually happens because Docker requires sudo access to run, so on shared machines administrators usually would rather install Singularity, which also uses containers but without sudo.
How to run fmriprep (and not die trying)
Published:
If you are here you probably already know about fmriprep and BIDS, so no need to get into that. Let’s get started.